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SRX24362049: GSM8229921: prefrontal cortex, Saline 4; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 19.4M spots, 5.8G bases, 1.8Gb downloads

External Id: GSM8229921_r1
Submitted by: UNMC
Study: Perinatal opioid exposure and outcomes of exposed offspring in early adolescence
show Abstracthide Abstract
The opioid epidemic has received considerable attention, but the impact on perinatal opioid-exposed (POE) offspring remains underexplored. This study addresses the emerging public health challenge of understanding and treating POE children. We examine two scenarios using preclinical models: offspring exposed to oxycodone (OXY) in utero (IUO) and postnatally (PNO). We hypothesized exposure to OXY during pregnancy primes offspring for neurodevelopmental deficits and severity of deficits is dependent on timing of exposure. Notable findings include reduced head size and brain weight in offspring. Molecular analyses revealed significantly lower levels of inflammasome-specific genes in the prefrontal cortex (PFC). Gene Set Enrichment Analysis (GSEA) and Ingenuity Pathway Analysis (IPA) highlighted the enrichment of genes associated with mitochondrial and synapse dysfunction in POE offspring. Western blot analysis validated IPA predictions of mitochondrial dysfunction in PFC-derived synaptosomes. Behavioral studies identified significant social deficits in POE offspring. This study presents the first comparative analysis of PNO- and IUO-offspring during early adolescence finding PNO-offspring have considerably greater deficits. The striking difference in deficit severity in PNO-offspring suggests that exposure to opioids in late pregnancy pose the greatest risk for offspring well-being. Overall design: To investigate the impacts of pre-natal versus post-natal oxycodone exposure on offspring wellbeing in early adolescence. Two dams were used per treatment condition (2 animals were used per dam): 4 control , 4 PNO, 4 IUO. RNA was isolated from the prefrontal cortex and these samples were sequenced.
Sample: prefrontal cortex, Saline 4
SAMN41076389 • SRS21119439 • All experiments • All runs
Library:
Name: GSM8229921
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA Isolation was completed using the Direct-Zol RNA kits (Zymo Research Corp., Irvine, CA, USA) following the manufacturer's protocol Poly(A) RNA sequencing library was prepared following Illumina's TruSeq-stranded-mRNA sample preparation protocol. RNA integrity was checked with Agilent Technologies 2100 Bioanalyzer. Poly(A) tail-containing mRNAs were purified using oligo-(dT) magnetic beads with two rounds of purification. After purification, poly(A) RNA was fragmented using divalent cation buffer in elevated temperature
Runs: 1 run, 19.4M spots, 5.8G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR2879828419,429,5005.8G1.8Gb2024-04-25

ID:
32676851

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